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Articles (33)
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Human and nematode orthologs — lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans

Sarah J Wheelan, Mark S Boguski, Laurent Duret, Wojciech Makałowski

Journal:

Gene

Année:

1999

Langue:

english

Fichier:

PDF, 494 KB

english, 1999

A primary breast cancer with distinct foci of estrogen receptor-alpha positive and negative cells derived from the same clonal origin as revealed by whole exome sequencing

Kyker-Snowman, Kelly, Erlanger Avigdor, Bracha, Nasim, Mansoor, Cimino-Mathews, Ashley, Wheelan, Sarah J., Argani, Pedram, Park, Ben Ho

Journal:

Breast Cancer Research and Treatment

Année:

2018

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2018

Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

Luchetti, Andrea, Forni, Giobbe, Skaist, Alyza M., Wheelan, Sarah J., Mantovani, Barbara

Journal:

Zoological Letters

Année:

2019

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2019

De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays

Xu, Zhuwei, Green, Brian, Benoit, Nicole, Schatz, Michael, Wheelan, Sarah, Cormack, Brendan

Journal:

Molecular Microbiology

Année:

2020

Langue:

english

Fichier:

PDF, 24.15 MB

english, 2020

A medical student scholarly concentrations program: scholarly self-efficacy and impact on future research activities

DiBiase, Rebecca M., Beach, Mary Catherine, Carrese, Joseph A., Haythornthwaite, Jennifer A., Wheelan, Sarah J., Atkinson, Meredith A., Geller, Gail, Gebo, Kelly A., Greene, Jeremy A., Sozio, Stephen

Journal:

Medical Education Online

Année:

2020

Fichier:

PDF, 1.17 MB

2020

Genome research: the second decade. A report on the XI Cold Spring Harbor Laboratory Meeting On Genome Mapping and Sequencing, May 13–17, 1998, Cold Spring Harbor, NY

Sarah Wheelan, Wojciech Makalowski

Journal:

Computers & Chemistry

Année:

2000

Langue:

english

Fichier:

PDF, 401 KB

english, 2000

Establishing the baseline level of repetitive element expression in the human cortex

Svitlana Tyekucheva, Robert H Yolken, W Richard McCombie, Jennifer Parla, Melissa Kramer, Sarah J Wheelan, Sarven Sabunciyan

Journal:

BMC Genomics

Année:

2011

Langue:

english

Fichier:

PDF, 991 KB

english, 2011

Stacking the deck: double-tiled DNA microarrays

Wheelan, Sarah J, Martínez-Murillo, Francisco, Irizarry, Rafael A, Boeke, Jef D

Journal:

Nature Methods

Année:

2006

Langue:

english

Fichier:

PDF, 303 KB

english, 2006

Mobile Interspersed Repeats Are Major Structural Variants in the Human Genome

Cheng Ran Lisa Huang, Anna M. Schneider, Yunqi Lu, Tejasvi Niranjan, Peilin Shen, Matoya A. Robinson, Jared P. Steranka, David Valle, Curt I. Civin, Tao Wang, Sarah J. Wheelan, Hongkai Ji, Jef D. Boek

Journal:

Cell

Année:

2010

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2010

Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis

Tejasvi S Niranjan, Abby Adamczyk, Héctor Corrada Bravo, Margaret A Taub, Sarah J Wheelan, Rafael Irizarry, Tao Wang

Journal:

Genome Biology

Année:

2011

Langue:

english

Fichier:

PDF, 7.29 MB

english, 2011

Genome-wide Consequences of Deleting Any Single Gene

Teng, Xinchen, Dayhoff-Brannigan, Margaret, Cheng, Wen-Chih, Gilbert, Catherine E., Sing, Cierra N., Diny, Nicola L., Wheelan, Sarah J., Dunham, Maitreya J., Boeke, Jef D., Pineda, Fernando J., Hardwi

Journal:

Molecular Cell

Année:

2013

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2013

Cellular Resolution Maps of X Chromosome Inactivation: Implications for Neural Development, Function, and Disease

Wu, Hao, Luo, Junjie, Yu, Huimin, Rattner, Amir, Mo, Alisa, Wang, Yanshu, Smallwood, Philip M., Erlanger, Bracha, Wheelan, Sarah J., Nathans, Jeremy

Journal:

Neuron

Année:

2014

Langue:

english

Fichier:

PDF, 8.18 MB

english, 2014

TE-array—a high throughput tool to study transposon transcription

Gnanakkan, Veena P, Jaffe, Andrew E, Dai, Lixin, Fu, Jie, Wheelan, Sarah J, Levitsky, Hyam I, Boeke, Jef D, Burns, Kathleen H

Journal:

BMC Genomics

Année:

2013

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2013

The incredible shrinking world of DNA microarrays

Wheelan, Sarah J., Martínez Murillo, Francisco, Boeke, Jef D.

Journal:

Molecular BioSystems

Année:

2008

Langue:

english

Fichier:

PDF, 599 KB

english, 2008

Telomere Phenotypes in Females with Heterozygous Mutations in the Dyskeratosis Congenita 1 ( DKC1 ) Gene

Alder, Jonathan K., Parry, Erin M., Yegnasubramanian, Srinivasan, Wagner, Christa L., Lieblich, Lawrence M., Auerbach, Robert, Auerbach, Arleen D., Wheelan, Sarah J., Armanios, Mary

Journal:

Human Mutation

Année:

2013

Langue:

english

Fichier:

PDF, 339 KB

english, 2013

Familial and sporadic pancreatic cancer share the same molecular pathogenesis

Norris, Alexis L., Roberts, Nicholas J., Jones, Siân, Wheelan, Sarah J., Papadopoulos, Nickolas, Vogelstein, Bert, Kinzler, Kenneth W., Hruban, Ralph H., Klein, Alison P., Eshleman, James R.

Journal:

Familial Cancer

Année:

2015

Langue:

english

Fichier:

PDF, 798 KB

english, 2015

Short-term inhibition of 11β-hydroxysteroid dehydrogenase type 1 reversibly improves spatial memory but persistently impairs contextual fear memory in aged mice

Wheelan, Nicola, Webster, Scott P., Kenyon, Christopher J., Caughey, Sarah, Walker, Brian R., Holmes, Megan C., Seckl, Jonathan R., Yau, Joyce L.W.

Journal:

Neuropharmacology

Année:

2015

Langue:

english

Fichier:

PDF, 715 KB

english, 2015

Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1

Creamer, Tyler J., Darby, Miranda M., Jamonnak, Nuttara, Schaughency, Paul, Hao, Haiping, Wheelan, Sarah J., Corden, Jeffry L., Proudfoot, Nick J.

Journal:

PLoS Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2011

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package

Favorov, Alexander, Mularoni, Loris, Cope, Leslie M., Medvedeva, Yulia, Mironov, Andrey A., Makeev, Vsevolod J., Wheelan, Sarah J., Lapp, Hilmar

Journal:

PLoS Computational Biology

Année:

2012

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2012

Centroacinar cells are progenitors that contribute to endocrine pancreas regeneration

Delaspre, Fabien, Beer, Rebecca L., Rovira, Meritxell, Huang, Wei, Wang, Guangliang, Gee, Stephen, Vitery, Maria del Carmen, Wheelan, Sarah J., Parsons, Michael J.

Journal:

Diabetes

Année:

2015

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2015

ATM Kinase Is Required for Telomere Elongation in Mouse and Human Cells

Lee, Stella Suyong, Bohrson, Craig, Pike, Alexandra Mims, Wheelan, Sarah Jo, Greider, Carol Widney

Journal:

Cell Reports

Année:

2015

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2015

DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

Sunil Gangadharan, Loris Mularoni, Jennifer Fain-Thornton, Sarah J. Wheelan and Nancy L. Craig

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2010

NUP98-PHF23 fusion is recurrent in acute myeloid leukemia and shares gene expression signature of leukemic stem cells

Ho, Hao, Skaist, Alyza M., Pallavajjala, Aparna, Yonescu, Raluca, Batista, Denise, Wheelan, Sarah J., Ning, Yi

Journal:

Leukemia Research

Année:

2016

Langue:

english

Fichier:

PDF, 405 KB

english, 2016

Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma

Guo, Theresa, Gaykalova, Daria A., Considine, Michael, Wheelan, Sarah, Pallavajjala, Aparna, Bishop, Justin A, Westra, William H., Ideker, Trey, Koch, Wayne M, Khan, Zubair, Fertig, Elana J., Califano

Journal:

International Journal of Cancer

Année:

2016

Langue:

english

Fichier:

PDF, 445 KB

english, 2016

PTBP1 and PTBP2 Repress Nonconserved Cryptic Exons

Ling, Jonathan P., Chhabra, Resham, Merran, Jonathan D., Schaughency, Paul M., Wheelan, Sarah J., Corden, Jeffry L., Wong, Philip C.

Journal:

Cell Reports

Année:

2016

Langue:

english

Fichier:

PDF, 5.75 MB

english, 2016

Translocation junctions inTCF3-PBX1acute lymphoblastic leukemia/lymphoma cluster near transposable elements

Rodić, Nemanja, Zampella, John G, Cornish, Toby C, Wheelan, Sarah J, Burns, Kathleen H

Journal:

Mobile DNA

Année:

2013

Langue:

english

Fichier:

PDF, 528 KB

english, 2013

Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals

El-Diwany, Ramy, Breitwieser, Florian P., Soliman, Mary, Skaist, Alyza M., Srikrishna, Geetha, Blankson, Joel N., Ray, Stuart C., Wheelan, Sarah J., Thomas, David L., Balagopal, Ashwin

Journal:

AIDS

Année:

2017

Langue:

english

Fichier:

PDF, 5.09 MB

english, 2017

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data

Stavrovskaya, Elena D., Niranjan, Tejasvi, Fertig, Elana J., Wheelan, Sarah J., Favorov, Alexander V., Mironov, Andrey A.

Journal:

Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 755 KB

english, 2017

ETS2 is a prostate basal cell marker and is highly expressed in prostate cancers aberrantly expressing p63

Torres, Alba, Alshalalfa, Mohammed, Davicioni, Elai, Gupta, Anuj, Yegnasubramanian, Srinivasan, Wheelan, Sarah J., Epstein, Jonathan I., De Marzo, Angelo M., Lotan, Tamara L.

Journal:

The Prostate

Année:

2018

Langue:

english

Fichier:

PDF, 2.58 MB

english, 2018

Detection of a Single Identical Cytomegalovirus (CMV) Strain in Recently Seroconverted Young Women

Murthy, Suchetha, Hayward, Gary S., Wheelan, Sarah, Forman, Michael S., Ahn, Jin-Hyun, Pass, Robert F., Arav-Boger, Ravit, Means, Robert E.

Journal:

PLoS ONE

Année:

2011

Langue:

english

Fichier:

PDF, 615 KB

english, 2011

The Terabase Search Engine: a large-scale relational database of short-read sequences

Wilton, Richard, Wheelan, Sarah J, Szalay, Alexander S, Salzberg, Steven L, Wren, Jonathan

Journal:

Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 420 KB

english, 2018

Quantifying the relative amount of mouse and human DNA in cancer xenografts using species-specific variation in gene length

Lin, Ming-Tseh, Tseng, Li-Hui, Kamiyama, Hirohiko, Kamiyama, Mihoko, Lim, Phillip, Hidalgo, Manuel, Wheelan*, Sarah, Eshleman*, James

Journal:

BioTechniques

Année:

2010

Langue:

english

Fichier:

PDF, 746 KB

english, 2010

Somatic mitochondrial mutation discovery using ultra-deep sequencing of the mitochondrial genome reveals spatial tumor heterogeneity in head and neck squamous cell carcinoma

Schubert, Adrian D., Channah Broner, Esther, Agrawal, Nishant, London, Nyall, Pearson, Alexander, Gupta, Anuj, Wali, Neha, Seiwert, Tanguy Y., Wheelan, Sarah, Lingen, Mark, Macleod, Kay, Allen, Hailey

Journal:

Cancer Letters

Année:

2019

Fichier:

PDF, 2.83 MB

2019